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The various versions you see are just that, different versions of the same game. One set is the original disks, others are the cracked version and there can be many of those for the more popular...

If all else fails, you could also make a copy of any one of your adf files, and use WinUAE to format it just like you would a real floppy on a real amiga. That will usually work, but is just about...